hanna
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6e4fd8db4a
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Better formatting of available walkers, and only output them along with help. Cleanup JVMUtils.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1290 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-21 22:23:28 +00:00 |
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hanna
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1843684cd2
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Cleanup: GATKEngine no longer needs to be lazy loaded, b/c the plugin directory no longer exists.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1287 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-21 18:50:51 +00:00 |
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hanna
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df1c61e049
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Re-add the plugin path.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1271 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-16 22:48:44 +00:00 |
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hanna
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7c30c30d26
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Cleaned up some duplicate code in preparation for making plugin dir configurable.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1270 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-16 22:02:21 +00:00 |
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hanna
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9f0fb9f3aa
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Fix for GSA-90: GATK banner and error messages should point to the wiki website.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1226 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-13 21:56:41 +00:00 |
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hanna
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03e1713988
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Better support for specifying read filters to apply directly from the walkers.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1212 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-09 23:59:53 +00:00 |
aaron
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f304803811
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initial check-in of an easy way to create command line tools based on the GATK
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@970 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-10 17:34:02 +00:00 |