54 Commits (63b5c12cbd9d13b3aa48a8c86bdb2eb933a2f310)

Author	SHA1	Message	Date
kcibul	ce72932a45	* refactored GenomeLoc to use contigIndex internally for performance and fixed several calling classes ... * added basic unit test for GenomeLoc * fixed bug when parsing genome locations like chr1:5000 the start position was being left as maxint rather than being set to the same as the stop position. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@365 348d0f76-0448-11de-a6fe-93d51630548a	2009-04-12 02:25:17 +00:00
hanna	49fd951d8c	Initial test suite for FastaSequenceFile2, so I can add parallelism support with abandon. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@364 348d0f76-0448-11de-a6fe-93d51630548a	2009-04-11 21:10:42 +00:00
hanna	b17a03abbd	Fix argument parser test case. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@215 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-27 16:05:18 +00:00
aaron	c2b2ed8e1d	added our first junit test, for the argument parser ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@176 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-24 21:14:30 +00:00