gatk-3.8

Author	SHA1	Message	Date
ebanks	340bd0e2c1	Removed hard-coded pointers to references git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3934 348d0f76-0448-11de-a6fe-93d51630548a	2010-08-04 17:59:37 +00:00
hanna	4995950d04	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3701 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-01 04:40:31 +00:00
aaron	4014a8a674	A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: UnitTest and IntegrationTest are the two valid file name patterns for tests. Thanks! git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3135 348d0f76-0448-11de-a6fe-93d51630548a	2010-04-08 06:14:15 +00:00