6 Commits (60f05379a709d6af5cd1fb69acfcd8155861c2de)

Author	SHA1	Message	Date
hanna	e53432d54d	Checkpoint for combining adjacent intervals into the same shard. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2782 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-05 02:48:02 +00:00
hanna	668c7da33d	Bug fix in custom override of queryOverlapping. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2743 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-29 21:35:59 +00:00
hanna	e7f5c93fe5	Cleaning up the inheritance hierarchy from the previous commit. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2738 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-29 19:13:36 +00:00
hanna	3d922a019f	Basic support for very simple index-driven locus traversals. Interface has been changed to ... support batched intervals in a single shard, but intervals are not yet compressed into a single shard. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2730 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-29 03:14:26 +00:00
hanna	b19bb19f3d	First successful test of new sharding system prototype. Can traverse over reads from a single ... BAM file. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2587 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-15 03:35:55 +00:00
hanna	7893aaefe9	Updates to chunk iteration. Includes the return of the dreaded *2.java files; ... hopefully I can find a way to kill these off before the Picard patch is ready. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2550 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-08 20:20:56 +00:00