depristo
|
956b570c8e
|
V5 improvements to VariantContext. Now fully supports genotypes. Filtering enabled. Significant tests throughout system. Support for rebuilding variant contexts from subsets of genotypes. Some code cleanup around repository
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2721 348d0f76-0448-11de-a6fe-93d51630548a
|
2010-01-28 18:37:17 +00:00 |
kiran
|
af0b03a257
|
Added tests for mostFrequentBaseFraction() and reverseComplementString()
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@944 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-06-09 00:53:45 +00:00 |
|
depristo
|
7a979859a9
|
Intermediate checking for evaluation -- now supports transition / transversion evaluation
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@793 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-05-22 17:05:06 +00:00 |
|
kiran
|
bdf772f017
|
Added test for determining the fraction of a sequence that's taken up by the most frequent base (quick-and-dirty homopolymer testing).
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@780 348d0f76-0448-11de-a6fe-93d51630548a
|
2009-05-21 20:35:08 +00:00 |