gatk-3.8

Author	SHA1	Message	Date
depristo	72ad8ded19	Removed unused importants, but some of these scripts are now out of date (they have been for a long time) so they don't compile anyway git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5837 348d0f76-0448-11de-a6fe-93d51630548a	2011-05-22 18:43:48 +00:00
rpoplin	825682f58c	oops, putting the script back into a sensible state git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5765 348d0f76-0448-11de-a6fe-93d51630548a	2011-05-04 20:17:05 +00:00
rpoplin	b5ab2274f6	Committing the base qscript I used to make the Phase1 Project Consensus. Does per-population cleaning and simplifyBAM, and then per-analysis-panel calling with genotype given alleles. Combines info fields using the panel with max AC. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5764 348d0f76-0448-11de-a6fe-93d51630548a	2011-05-04 20:13:26 +00:00