Commit Graph

3 Commits (5dca1e4d2e44d734b95a89e46cb9e416dfd4bae0)

Author SHA1 Message Date
chartl 0723b0f44c Generalized association is now working. Output is in a horrific format. Implementation of T-testing. Improvements are to look for classes dynamically (a la VariantEval/VariantAnnotator), beautify output, and do optimizations where they exist.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5341 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-01 01:23:37 +00:00
chartl b089d35b21 Fix expand intervals to do the right thing:
- No more duplicate intervals
 - Truncation at intervals that already exist, e.g.

exists:      |--------|           |-------|
new:               |---------|
fixed:                 |-----|

note that weird instances like:

exists:           |-|        |-|                  |-|
new:           |---------------------|
fixed:                          |----|

e.g. you're truncated to the nearest interval on whatever side. In general many behaviors could happen in this instance, this is the one currently implemented.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5323 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-26 04:19:01 +00:00
chartl 5398cf620a Bug fixes in the in process function (spoiled by python: was not closing my writers). SortByRef now works somewhat like the perl script does, rather than doing a memory-expensive sort. Adding a QTools qscript which is kinda clunky, and will be used mostly for integration tests of these IPFs, pending some better way to construct argument collections and function accessors at compile-time.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5182 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-03 17:32:46 +00:00