gatk-3.8

Commit Graph

Author	SHA1	Message	Date
kshakir	8619f49d20	Added a utility method to retrieve the contig lengths for WG chunking. Added a rudimentary GATKReportParser for parsing VE3 results. Re-enabled the FCPTest using VE3, the GATKRP, and the PicardAggregationUtils. The tag type for .rod files is DBSNP, not ROD. More explicit return types on implicit methods. Added null checks for implicit string to/from file conversions. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5668 348d0f76-0448-11de-a6fe-93d51630548a	2011-04-20 19:22:21 +00:00
kshakir	4bb573b1f5	Centralizing a bunch of Broad specific utility functions from code scattered in GSA-Firehose, PipelineTest, custom QScripts, etc. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5631 348d0f76-0448-11de-a6fe-93d51630548a	2011-04-13 21:29:02 +00:00

Author

SHA1

Message

Date

kshakir

8619f49d20

Added a utility method to retrieve the contig lengths for WG chunking.

Added a rudimentary GATKReportParser for parsing VE3 results.
Re-enabled the FCPTest using VE3, the GATKRP, and the PicardAggregationUtils.
The tag type for .rod files is DBSNP, not ROD.
More explicit return types on implicit methods.
Added null checks for implicit string to/from file conversions.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5668 348d0f76-0448-11de-a6fe-93d51630548a

2011-04-20 19:22:21 +00:00

kshakir

4bb573b1f5

Centralizing a bunch of Broad specific utility functions from code scattered in GSA-Firehose, PipelineTest, custom QScripts, etc.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5631 348d0f76-0448-11de-a6fe-93d51630548a

2011-04-13 21:29:02 +00:00

2 Commits (5dca1e4d2e44d734b95a89e46cb9e416dfd4bae0)