gatk-3.8

Author	SHA1	Message	Date
kshakir	fd5970fdd4	At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them. No longer generating deprecated GATK arguments on the Queue extensions. Emitting deprecation warnings to Queue compile to help debugging issues. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4195 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-02 21:30:48 +00:00
depristo	ca503e5801	Queue scripts for recalibration and running nSample UG jobs pre and dynamic merging git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4186 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-01 20:23:37 +00:00

Author

SHA1

Message

Date

kshakir

At chartl's superb suggestion, command line files are now all Files instead of old method of sometimes "has a File". Should be easier when reassigning them.

No longer generating deprecated GATK arguments on the Queue extensions.
Emitting deprecation warnings to Queue compile to help debugging issues.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4195 348d0f76-0448-11de-a6fe-93d51630548a

2010-09-02 21:30:48 +00:00

depristo

ca503e5801

Queue scripts for recalibration and running nSample UG jobs pre and dynamic merging

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4186 348d0f76-0448-11de-a6fe-93d51630548a

2010-09-01 20:23:37 +00:00

2 Commits (5d0d9c7dce2888e9742275de6635f0531bfcf2f6)