depristo
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669d9096e3
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now support -o output option, useful for pipelines
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3959 348d0f76-0448-11de-a6fe-93d51630548a
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2010-08-06 14:57:04 +00:00 |
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depristo
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dd978dd525
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misc. changes to python scripts
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3751 348d0f76-0448-11de-a6fe-93d51630548a
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2010-07-09 00:13:35 +00:00 |
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depristo
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cf910d9cc2
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misc. useful updates to python library
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3683 348d0f76-0448-11de-a6fe-93d51630548a
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2010-06-30 16:33:32 +00:00 |
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depristo
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56467df49a
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minor improvements to snpSelector to work with hapmap chip VCF files
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2343 348d0f76-0448-11de-a6fe-93d51630548a
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2009-12-13 17:59:32 +00:00 |
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depristo
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2632cb6b58
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minor improvements to snp selector
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2275 348d0f76-0448-11de-a6fe-93d51630548a
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2009-12-07 03:37:14 +00:00 |
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depristo
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0753315156
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updates to the python snp selector -- now sorts info fields and we stop printing unnecessary debugging info in vcf2table
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2265 348d0f76-0448-11de-a6fe-93d51630548a
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2009-12-04 22:16:02 +00:00 |
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depristo
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8a87d5add1
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misc. bug fixes
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2212 348d0f76-0448-11de-a6fe-93d51630548a
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2009-12-02 14:36:03 +00:00 |
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depristo
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bc35a34f60
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More informative printing, no longer prints tons of NaN warnings
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2139 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-24 15:45:48 +00:00 |
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depristo
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da7de9960b
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General bug fixes for snpSelector. More robust error checking and handling of NaN values.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2106 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-21 14:48:29 +00:00 |
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depristo
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52494d8176
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cleanup of SNP selector -- ready for some additional testing
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2042 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-13 21:46:31 +00:00 |
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depristo
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1a4d071d37
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Better snpSelector, plus VCFmerge tool
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2022 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-11 22:02:57 +00:00 |
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depristo
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3990c6d950
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snpSelector v3 -- bootstrapping support and VCF output
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2004 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-09 22:48:51 +00:00 |
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depristo
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f777c806d6
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snpSelector v2 -- code refactoring and support for comparison with known truth. Looks great.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1986 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-07 19:32:12 +00:00 |
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depristo
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7cb51dbc31
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snpSelector v1 -- and supporting changes to VCF reader
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1983 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-06 23:00:46 +00:00 |
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depristo
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d60c632099
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Minor output improvement
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1965 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-03 13:20:55 +00:00 |
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depristo
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44ea55d338
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Useful library for parsing VCF files, plus a general VCF->table converter
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1964 348d0f76-0448-11de-a6fe-93d51630548a
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2009-11-03 13:14:04 +00:00 |