3 Commits (5b34bb9ab00b2aca53ba17ce035730b1c49d60bb)

Author	SHA1	Message	Date
ebanks	9f3b99c11b	Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system. ... Removing obsolete genotyping classes. First stage of removing dependence on old Genotype class. More changes to come. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2960 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-09 03:41:07 +00:00
ebanks	971834ca90	Added a walker to the vcf tools compilation: one that combines vcf records. Both merges and unions are supported (see documentation... when it gets written this week). ... Also, moved some code that pulls samples out of rods from VCFUtils into SampleUtils. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2552 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-10 06:45:11 +00:00
ebanks	eeddf0d08e	Adding sample utils for convenience methods to pull out samples from e.g. SAMFileHeader or Genotype objects ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2405 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-18 18:51:21 +00:00