3 Commits (591102a84134a4c6f2ed35e8ef82dac1f02bb59c)

Author	SHA1	Message	Date
chartl	3d92e5a737	Initial commit of integration test(s) for CoverageStatistics, currently in progress [midway commit is for Matt] ... Modifications to CoverageStatistics - now includes and extends much of the behavior of DepthOfCoverage (per-base output, per-target output). Additional functionality (coverage without deletions, base counts, by read group instead of by sample) is upcoming. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2888 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-25 20:25:07 +00:00
depristo	5f74fffa02	Massive improvements to VE2 infrastructure. Now supports VCF writing of interesting sites; multiple comp and eval tracks. Eric will be taking it over and expanding functionality over the next few weeks until it's ready to replace VE1 ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2832 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-12 15:26:52 +00:00
depristo	c66861746a	improvements to ve2, including more meaningful mendelian violation counting. Support for VCF emitted interesting sites, annotated according to the evaluations themselves. Basic intergration test for VE2 started ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2819 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-10 16:12:29 +00:00