gatk-3.8

Author	SHA1	Message	Date
kshakir	75c98c42b8	Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input. Checked in example qscripts that are basically todo integration tests. Replaced use of queue @Input/@Output with Sting's new @Input/@Output. This means you'll now have to doc-ument the annotations. More work on dependency resolution cycles being created in the graph during scatter/gather. Filtering nulls to avoid NPE exceptions in scala's 'Collection'.hashCode. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3643 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-25 20:51:13 +00:00
hanna	c1e53d407d	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had unicode quote characters embedded in it. These characters were invisible inside IntelliJ but cause compile warnings for Ryan and Aaron, who for whatever reason have a different default charset. Fixed. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3203 348d0f76-0448-11de-a6fe-93d51630548a	2010-04-20 15:26:32 +00:00
hanna	1bc26f69e9	An attempt to cleanup the Utils directory. Email to follow. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3198 348d0f76-0448-11de-a6fe-93d51630548a	2010-04-19 23:00:08 +00:00

Author

SHA1

Message

Date

kshakir

Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input.

Checked in example qscripts that are basically todo integration tests.
Replaced use of queue @Input/@Output with Sting's new @Input/@Output.  This means you'll now have to doc-ument the annotations.
More work on dependency resolution cycles being created in the graph during scatter/gather.
Filtering nulls to avoid NPE exceptions in scala's 'Collection'.hashCode.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3643 348d0f76-0448-11de-a6fe-93d51630548a

2010-06-25 20:51:13 +00:00

hanna

c1e53d407d

The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had

unicode quote characters embedded in it.  These characters were invisible inside
IntelliJ but cause compile warnings for Ryan and Aaron, who for whatever reason
have a different default charset.  Fixed.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3203 348d0f76-0448-11de-a6fe-93d51630548a

2010-04-20 15:26:32 +00:00

hanna

1bc26f69e9

An attempt to cleanup the Utils directory. Email to follow.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3198 348d0f76-0448-11de-a6fe-93d51630548a

2010-04-19 23:00:08 +00:00

3 Commits (569456850df61a2d69badc374a06c83062ff648d)