Eric Banks
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a4670113bd
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Refactored/renamed the nested integer array; cleaned up code a bit.
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2012-07-03 00:12:33 -04:00 |
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Eric Banks
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cac72bce91
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Initial version of int indexed mapping for BQSR. Will be cleaned up in a bit.
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2012-07-02 14:33:33 -04:00 |
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Eric Banks
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1fafd9f6c8
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NestedHashMap-based implementation of BQSRv2 along with a few minor optimizations. Not a huge runtime upgrade over the long bitset approach, but it allows us to implement further optimizations going forward. Integration test change because the original version had a bug in the quantized qual table creation.
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2012-06-27 16:55:49 -04:00 |
Ryan Poplin
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0ad7d5fbc1
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Standalone common Pair HMM utility class with associated unit tests.
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2012-03-01 22:41:13 -05:00 |
Mark DePristo
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9992c373be
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
David Roazen
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3c9497788e
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Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
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2011-06-28 06:55:19 -04:00 |