3 Commits (5398cf620aecd2715ff1423e761e75477f882afe)

Author	SHA1	Message	Date
fromer	7605f0e6c1	Corrected input/output definitions for Queue ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5173 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-02 07:39:00 +00:00
fromer	3839fd1a25	Updated phasing pipeline to properly read samples from VCF and BAM files ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5172 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-02 07:16:05 +00:00
fromer	798955b006	After discussing with Mark, revert to "Master merging" of phase information from VCFs. This has the advantage of creating minimal phased VCFs from RBP, from which phase info is merged into the original "master VCF". Also, updated Genotype.sameGenotype() to be simpler and NOT REVERSE the ignorePhase flag in comparing Allele lists/sets ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5167 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-01 19:50:15 +00:00