Karthik Gururaj
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532485ca59
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Removed unnecessary files
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2014-01-16 20:26:41 -08:00 |
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Karthik Gururaj
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90938b8610
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Minor typo in comments fixed
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2014-01-16 19:58:04 -08:00 |
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Karthik Gururaj
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e90405cd1f
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1. Nested loops over reads and haplotypes moved to C++ through JNI
2. OpenMP support added
3. Using direct access to Java primitive arrays
4. Debug messages disabled
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2014-01-16 19:53:50 -08:00 |
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Karthik Gururaj
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8240ea826e
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Changes:
1. Added TRISTATE_CORRECTION in pairhmm-template-kernel.cc (function
stripINITIALIZATION)
2. Added VEC_DIV macros to define-double.h and define-float.h
3. Edited initializeVectors to match Java
C++ original:
*(ptr_p_MY+r-1) = (r == ROWS - 1) ? ctx._(1.0) : ctx.ph2pr[_d];
*(ptr_p_YY+r-1) = (r == ROWS - 1) ? ctx._(1.0) : ctx.ph2pr[_c];
Modified:
*(ptr_p_MY+r-1) = ctx.ph2pr[_d];
*(ptr_p_YY+r-1) = ctx.ph2pr[_c];
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2014-01-15 10:48:58 -08:00 |
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Karthik Gururaj
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5fab96b7ee
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First import of AVX-JNI to git
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2014-01-14 17:26:55 -08:00 |