gatk-3.8

Author	SHA1	Message	Date
hanna	b80cf7d1d9	Modifications to the output system for better interaction with @Output. Multiplexed arguments. More details in the Monday meeting. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4077 348d0f76-0448-11de-a6fe-93d51630548a	2010-08-22 14:27:05 +00:00
aaron	0f29f2ae3f	fixes for the Tree index, and some small clean-up in the GATK. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3991 348d0f76-0448-11de-a6fe-93d51630548a	2010-08-09 20:41:50 +00:00
hanna	017ab6b690	Experimental versions of downsampler and Ryan's deduper are now available either as walker attributes or from the command-line. Not ready yet! Downsampling/deduping works in a general sense, but this approach has not been completely optimized or validated. Use with caution. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3392 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-19 05:40:05 +00:00
aaron	4014a8a674	A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: UnitTest and IntegrationTest are the two valid file name patterns for tests. Thanks! git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3135 348d0f76-0448-11de-a6fe-93d51630548a	2010-04-08 06:14:15 +00:00