gatk-3.8

Commit Graph

Author	SHA1	Message	Date
carneiro	50c870cfce	Data Processing Pipeline: local indel realignment, mark duplicates and BQSR. Done. Pacbio pipeline: now all pacbio bams have baq annotated in so running UG is uber fast. Methods pipeline: minor cosmetic changes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5253 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-16 17:22:30 +00:00
carneiro	6d3b878dde	data processing pipeline script already does: . Local Indel Realignment . Mark Duplicates will do: . Base Quality Score Recalibration (soon) it's working with a single BAM for testing, but will work with a list of bam files. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5250 348d0f76-0448-11de-a6fe-93d51630548a	2011-02-15 21:49:05 +00:00

Author

SHA1

Message

Date

carneiro

50c870cfce

Data Processing Pipeline: local indel realignment, mark duplicates and BQSR. Done.

Pacbio pipeline: now all pacbio bams have baq annotated in so running UG is uber fast.

Methods pipeline: minor cosmetic changes.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5253 348d0f76-0448-11de-a6fe-93d51630548a

2011-02-16 17:22:30 +00:00

carneiro

6d3b878dde

data processing pipeline script already does:

. Local Indel Realignment 
. Mark Duplicates

will do:
. Base Quality Score Recalibration (soon)

it's working with a single BAM for testing, but will work with a list of bam files.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5250 348d0f76-0448-11de-a6fe-93d51630548a

2011-02-15 21:49:05 +00:00

2 Commits (50c870cfce7d0117f89abbece8bdfcdc42ed0d18)