depristo
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9b54239f37
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Removed nDeletions and nInsertions as independent plots -- just not useful given nIndels and insertions/deletion ratio. Fixed jitter problems with rug plots by removing the rugs entirely. Recovered, and improved, comparative features lost by removing the rug plots by getting viewports to work (trivial) so now per sample metrics and distributions are displayed on the same page!
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6026 348d0f76-0448-11de-a6fe-93d51630548a
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2011-06-22 13:59:46 +00:00 |
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depristo
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a37e9bdbd4
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Now produces an expanded table at the start, as well
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6017 348d0f76-0448-11de-a6fe-93d51630548a
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2011-06-20 13:45:08 +00:00 |
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depristo
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907018768c
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Now uses AC directly from eval, not via AF, internally for AC vs. X plotting. Requires at least 1 SNP to include a site in TiTv plotting or snp/indel ratio. Uses .byAC not .byAF eval file now
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6014 348d0f76-0448-11de-a6fe-93d51630548a
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2011-06-19 03:05:17 +00:00 |
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depristo
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285da580f3
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Now with dbSNP rate
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6010 348d0f76-0448-11de-a6fe-93d51630548a
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2011-06-17 13:21:40 +00:00 |
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depristo
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9254faa27e
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Added density plots by sample for each metric. New command line argument ordering. No longer requires the per-sample.tsv suppl. data -- will conditionally load if available
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6003 348d0f76-0448-11de-a6fe-93d51630548a
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2011-06-16 12:46:29 +00:00 |
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depristo
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ce4e8d2093
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A few comments / todos.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6001 348d0f76-0448-11de-a6fe-93d51630548a
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2011-06-15 13:09:09 +00:00 |
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depristo
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85e20be7b7
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Renamed. More general
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5989 348d0f76-0448-11de-a6fe-93d51630548a
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2011-06-13 20:50:56 +00:00 |