5 Commits (4a7e6fee3f1bfe37cfaeec73728ed44b9fe7e44f)

Author	SHA1	Message	Date
Eric Banks	4a7e6fee3f	Remove support for BED file interval parsing in the GATK; it should all go through Tribble now. IndelRealigner no longer supports unordered interval input (which shouldn't have been used anyways). Temporarily commenting out serialization of arguments so that tests pass; this whole piece will be deleted soon anyways.	2011-10-27 13:38:08 -04:00
Eric Banks	3273c20c98	Added integration tests for Tribble-based intervals and fixed up some of the other tests based on some method changes.	2011-10-26 15:29:18 -04:00
Mark DePristo	6e828260a0	Removed -B support. Now explodes with error if -B provided.	2011-08-16 16:13:47 -04:00
Mark DePristo	a366f9a18d	Updating tools to use the RodBinding<T> syntax	2011-08-02 14:05:51 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, ... removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00