2 Commits (4a54f3f230a766ccf3c2f6f431c08880c9a8517b)

Author	SHA1	Message	Date
depristo	4a54f3f230	ThreadLocal version of CachingIndexedFastaSequenceFile. More efficient support for shared memory BAQ calculations ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4865 348d0f76-0448-11de-a6fe-93d51630548a	2010-12-17 15:44:48 +00:00
depristo	44feb4a362	Improved BAQ implementation. Now supports adding BAQ tags to reads on the fly with ADD_TAG_ONLY option. Caching fasta reader implementation, and changes throughout the system to enable this. Many performance improvements throughout the system due to better reference access patterns. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4792 348d0f76-0448-11de-a6fe-93d51630548a	2010-12-05 18:29:39 +00:00