7 Commits (46ca49b63dd37faea346fa178ee01c44d5e4f8e6)

Author	SHA1	Message	Date
Mauricio Carneiro	116885a450	Removed the "Walker" suffix from all walkers that had it. ... * Did not touch archived walkers... those can be named whatever. * Kept abstract classes that end in Walker untouched (e.g. LocusWalker, ReadWalker, ...) * Renamed a few inner classes due to conflict when stripping off Walker from their outer classes: ContigStats, FlagStats and FastaStats.	2012-07-20 17:27:11 -04:00
Mark DePristo	7b84347047	Main index is sorted by the template now.	2011-07-24 18:19:40 -04:00
Mark DePristo	3c34e9fa65	Cleanup emuns and tables	2011-07-24 17:45:58 -04:00
Mark DePristo	c6af4efcdc	Implemented see also and version header	2011-07-24 16:10:17 -04:00
Mark DePristo	5e0fe2d0f9	Support for style.css via refactored common.html included in all files	2011-07-24 15:42:39 -04:00
Mark DePristo	e262f4e10b	gatkdoc now generalized to use @Annotation. Multiple subsystems now use annotation to receive docs ... Index expanded to use summary() annotation field UserExceptions, ReadFilters, GATK engine all use the system to generate docs Doclet expanded to handle lots of new cases	2011-07-23 20:00:35 -04:00
Mark DePristo	f0be7348be	Generalized handler to allow it to be used with any arbitrary class structure. ... DocumentedGATKFeature now includes a field for the group name. Build.xml works with public / private now.	2011-07-22 14:07:40 -04:00