gatk-3.8

Author	SHA1	Message	Date
ebanks	44f3c5639a	I have finally figured out that when you volunteer to do something in group meeting, you keep getting pestered about it on Mark's Omniplan doc until it gets done (except for contig aliasing, of course). As such... We can now emit bzipped VCFs from the GATK. Details: any walker that defines a VCFWriter for its @Output (i.e. pretty much every core walker from UG and on), also has associated with it the -bzip (--bzip_compression) boolean argument. When set, it will emit a VCF that is compressed with bzip2. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4093 348d0f76-0448-11de-a6fe-93d51630548a	2010-08-24 04:14:50 +00:00

Author

SHA1

Message

Date

ebanks

I have finally figured out that when you volunteer to do something in group meeting, you keep getting pestered about it on Mark's Omniplan doc until it gets done (except for contig aliasing, of course). As such...

We can now emit bzipped VCFs from the GATK.

Details: any walker that defines a VCFWriter for its @Output (i.e. pretty much every core walker from UG and on), also has associated with it the -bzip (--bzip_compression) boolean argument.  When set, it will emit a VCF that is compressed with bzip2.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4093 348d0f76-0448-11de-a6fe-93d51630548a

2010-08-24 04:14:50 +00:00

1 Commits (44f3c5639ad4152e7bea9573dbe525b0069bc494)