Commit Graph

1 Commits (449b89bd349ff41c5e4b284ce588e6d7ac406b9c)

Author SHA1 Message Date
Christopher Hartl d795437202 - New UserExceptions added for when ReadFilters or Walkers specified on the command line are not found. When -rf xxxx cannot find the class corresponding to xxxx, all read filters are printed in a better formatted way, with links to their gatk docs.
- VariantAnnotatorEngine changed to call genotype annotations even if pilups and allele -> likelihood mappings are not present. Current genotype annotations altered to check for null pilupes and null mappings.
2012-09-04 16:41:44 -04:00