Commit Graph

5 Commits (444eae316c8d33e4b3ff765aa5b7211f5bd746a9)

Author SHA1 Message Date
David Roazen d647ea4fdc Long-delayed change to CachingIndexedFastaSequenceFile. Made the cache
non-static to avoid problems when multiple references are used within the same
thread (eg., during integration tests). This should kill the intermittent
IndelRealignerIntegrationTest failures.
2011-07-01 16:04:30 -04:00
Mark A. DePristo defa3cfe85 Moved around private walkers into appropriate directories in private gatk.walkers. Moved a few public walkers into private qc package, and some private qc walkers into the public directory. Removed several obviously broken and/or unused walkers. 2011-06-30 14:59:58 -04:00
David Roazen f18fffd625 Fixing broken paths to the testdata directory throughout the codebase. 2011-06-29 17:36:47 -04:00
Eric Banks 33c67a139c Wrong package; this should have been moved when VC got moved in from Tribble 2011-06-29 14:56:02 -04:00
David Roazen 3c9497788e Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
2011-06-28 06:55:19 -04:00