gatk-3.8

Commit Graph

Author	SHA1	Message	Date
Khalid Shakir	5dcac7b064	GATKReport v0.2: - Floating point column widths are measured correctly - Using fixed width columns instead of white space separated which allows spaces embedded in cell values - Legacy support for parsing white space separated v0.1 tables where the columns may not be fixed width - Enforcing that table descriptions do not contain newlines so that tables can be parsed correctly Replaced GATKReportTableParser with existing functionality in GATKReport	2011-08-03 00:24:47 -04:00
Khalid Shakir	59eb1f4663	Memory limits changed from Int to Double. Updated LSF calls to read memory units from config along with tweaks to select hosts. Moved some common code from GridEngine and LSF to super classes.	2011-07-21 22:57:18 -04:00
Mark DePristo	449bf1b539	Testdata for diffObjects. PipelineTest updated to point to MD5DB.java	2011-07-18 10:47:03 -04:00
Khalid Shakir	b6bc64a0c8	Cleanup of the utils.broad package. Using Picard IoUtils on sample names.	2011-07-01 20:47:03 -04:00
David Roazen	546e7777fa	Re-fixing paths in pipeline tests after example qscripts got moved.	2011-07-01 16:39:10 -04:00
David Roazen	11d4af0e75	Path-related fixes to the private queue pipeline tests.	2011-07-01 13:41:34 -04:00
David Roazen	9644f104c4	Fixes to the queue pipeline tests to account for the new directory structure.	2011-07-01 13:13:24 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00

8 Commits (3dfb60a46e2d150cfde3169bfd516df604dbb2f9)