Mauricio Carneiro
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22d2563823
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added BWA SW alignment
The pipeline now accepts fasta/fastq files and aligns them using BWA SW, adds default basequalities, creates read groups and performs BQSR.
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2011-08-09 17:05:24 -04:00 |
Mark DePristo
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4f8d830960
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Updated to reflect new parse() function
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2011-07-30 15:34:20 -04:00 |
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Mauricio Carneiro
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1af76736b9
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Guarantees that the list of files will always be in the same order.
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2011-07-17 11:41:34 -04:00 |
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Mauricio Carneiro
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224d373997
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No need to double overload the file constructor
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2011-07-15 15:19:10 -04:00 |
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Mauricio Carneiro
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7b7d40d5d9
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A better name for the qscript utilities. Throw here every method you find yourself repeatedly implementing in your qscripts!
Refactoring appropriately.
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2011-07-15 14:34:50 -04:00 |
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Mauricio Carneiro
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a670d6420a
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Refactoring Qscript utils into queue general utils package.
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2011-07-15 14:31:43 -04:00 |
David Roazen
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3c9497788e
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Reorganized the codebase beneath top-level public and private directories,
removing the playground and oneoffprojects directories in the process. Updated
build.xml accordingly.
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2011-06-28 06:55:19 -04:00 |