gatk-3.8

Commit Graph

Author	SHA1	Message	Date
David Roazen	e7e76ed76e	Replace org.broadinstitute.variant with jar built from the Picard repo The migration of org.broadinstitute.variant into the Picard repo is complete. This commit deletes the org.broadinstitute.variant sources from our repo and replaces it with a jar built from a checkout of the latest Picard-public svn revision.	2013-02-05 17:24:25 -05:00
David Roazen	a536e1da84	Move some VCF/VariantContext methods back to the GATK based on feedback -Moved some of the more specialized / complex VariantContext and VCF utility methods back to the GATK. -Due to this re-shuffling, was able to return things like the Pair class back to the GATK as well.	2013-01-29 16:56:55 -05:00
David Roazen	f63f27aa13	org.broadinstitute.variant refactor, part 2 -removed sting dependencies from test classes -removed org.apache.log4j dependency -misc cleanup	2013-01-28 09:03:46 -05:00

Author

SHA1

Message

Date

David Roazen

e7e76ed76e

Replace org.broadinstitute.variant with jar built from the Picard repo

The migration of org.broadinstitute.variant into the Picard repo is
complete. This commit deletes the org.broadinstitute.variant sources
from our repo and replaces it with a jar built from a checkout of the
latest Picard-public svn revision.

2013-02-05 17:24:25 -05:00

David Roazen

a536e1da84

Move some VCF/VariantContext methods back to the GATK based on feedback

-Moved some of the more specialized / complex VariantContext and VCF utility
 methods back to the GATK.

-Due to this re-shuffling, was able to return things like the Pair class back
 to the GATK as well.

2013-01-29 16:56:55 -05:00

David Roazen

f63f27aa13

org.broadinstitute.variant refactor, part 2

-removed sting dependencies from test classes
-removed org.apache.log4j dependency
-misc cleanup

2013-01-28 09:03:46 -05:00

3 Commits (3b67aa8aeeeb2631b98b04cd7ebf26e35ae5a46a)