gatk-3.8

Author	SHA1	Message	Date
hanna	017ab6b690	Experimental versions of downsampler and Ryan's deduper are now available either as walker attributes or from the command-line. Not ready yet! Downsampling/deduping works in a general sense, but this approach has not been completely optimized or validated. Use with caution. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3392 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-19 05:40:05 +00:00
hanna	a7ba88e649	Rework the way the MicroScheduler handles locus shards to handle intervals that span shards with less memory consumption. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2981 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-11 18:40:31 +00:00
hanna	cdce639bae	Partially reclaim performance lost during integration test fixes. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2961 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-09 12:36:11 +00:00
hanna	199b43fcf2	Reduce by interval alterations to interface with new sharding system. This checkin with be followed by a simplification of some of the locus traversal code. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2886 348d0f76-0448-11de-a6fe-93d51630548a	2010-02-25 00:16:50 +00:00