kiran
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7b5d8d7604
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Changed the intensities array order from cycle,channel to channel,cycle. This, I'm told, is a far more efficient allocation strategy.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1084 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-24 15:41:06 +00:00 |
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kiran
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e7f222108d
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More accessors. Can compute the sum of the quality scores in the read (useful for sorting) and can return a subset of itself.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@948 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-09 01:02:48 +00:00 |
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kiran
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5f67914b08
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Added loads of documentation.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@777 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-21 19:40:47 +00:00 |
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kiran
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6c5fbb988b
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Now basecalls an entire read (both ends of the pair, barcode... everything) at once. After, RawRead and FourProbRead can be asked to return a specified subset (corresponding to the ranges specified for each end of the read.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@754 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-20 00:09:20 +00:00 |
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kiran
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5858f20902
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Documentation.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@712 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-14 18:58:43 +00:00 |
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kiran
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6d98234555
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Holds raw intensities, sequence, and quality scores.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@701 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-14 16:52:03 +00:00 |