1 Commits (3273c20c98f89bbcc38a2292719d89f9293e7ced)

Author	SHA1	Message	Date
Eric Banks	9424e8b2ca	Initial working version of new interval system in which the argument for -L (and -XL) is allowed to be a rod file (e.g. VCF). Old samtools-style intervals still behave as before. BTI is no longer supported. The merging (union or intersection) of intervals is now consistently applied to all -L (or -XL) intervals, which is nice. More testing needed.	2011-10-26 14:11:49 -04:00