Commit Graph

6 Commits (3112302ec97539a14a7e551785cf711c6da8fe55)

Author SHA1 Message Date
kiran 65d0675a4e Some changes regarding what to do when a cycle is completely busted.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@946 348d0f76-0448-11de-a6fe-93d51630548a
2009-06-09 01:01:13 +00:00
kiran 5f67914b08 Added loads of documentation.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@777 348d0f76-0448-11de-a6fe-93d51630548a
2009-05-21 19:40:47 +00:00
kiran 6c5fbb988b Now basecalls an entire read (both ends of the pair, barcode... everything) at once. After, RawRead and FourProbRead can be asked to return a specified subset (corresponding to the ranges specified for each end of the read.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@754 348d0f76-0448-11de-a6fe-93d51630548a
2009-05-20 00:09:20 +00:00
kiran 5858f20902 Documentation.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@712 348d0f76-0448-11de-a6fe-93d51630548a
2009-05-14 18:58:43 +00:00
kiran 5824dea0c1 Trains and calls a read at a time rather than a base at a time (which, given it's name, it should have done in the first place)
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@705 348d0f76-0448-11de-a6fe-93d51630548a
2009-05-14 16:57:00 +00:00
kiran 688358190c Moved secondary base stuff out of playground for the purpose of making it a core utility. Modified package names and imports such that things would build properly.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@680 348d0f76-0448-11de-a6fe-93d51630548a
2009-05-12 20:24:18 +00:00