4 Commits (30a104228aa1a5d44ad8d6e11c9c66b929beb3a6)

Author	SHA1	Message	Date
aaron	f4cfb0f990	The first step in integrating Jim's tree based index scheme: ... - changed to a better method for getting headers from Codecs - some removal of old commented out code in the GATKAgrumentCollection - changes for the rename of FeatureReader to FeatureSource - removed the old Beagle ROD - cleaned up some of the code in SampleUtils git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3826 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-19 04:49:27 +00:00
aaron	0b03e28b60	updating the tribble library to include the reference dictionary reading / writing. We now check the dictionaries of any tracks that have them against the reference (all new tribble tracks and out-of-date tracks will have this). Also renamed some classes to be more reflective of their function. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3485 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-04 06:34:26 +00:00
aaron	2c55ac1374	fixes for parallel processing problems with Tribble, a small bug in the resource pool, and some more documentation. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3349 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-12 06:13:26 +00:00
aaron	7d2df3f511	example windowed ROD walker for Kristian, and updates to Tribble ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3325 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-07 17:12:50 +00:00