ebanks
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702ba553d6
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Some useful scripts for running only individual parts of the pilot1/2 cleaning/calling pipeline
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1587 348d0f76-0448-11de-a6fe-93d51630548a
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2009-09-11 17:38:33 +00:00 |
kiran
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dab7b6e825
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A useful perl module for quick argument parsing.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1491 348d0f76-0448-11de-a6fe-93d51630548a
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2009-08-31 15:44:57 +00:00 |
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kiran
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5d155440cd
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A useful, rule-based parallel job dispatcher.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1490 348d0f76-0448-11de-a6fe-93d51630548a
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2009-08-31 15:40:21 +00:00 |
asivache
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843d7e6c8f
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Now you can specify '-' instead of input file name, and the script will read from stdin
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1422 348d0f76-0448-11de-a6fe-93d51630548a
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2009-08-14 20:30:56 +00:00 |
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asivache
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8d06bb21ed
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A little gadget to select random samples from input stream(s) of unknown length. By default, selects a single line (with probability 1/TOTAL_NUMBER_OF_LINES_READ), with -N option randomly selects specified number of lines. Can read from STDIN or from arbitrary number of input streams (all streams will be merged). Examples:\n cat file1 file2 file3 | randomSampleFromStream.pl -N 5 \n\n or \n randomSampleFromStream.pl file1 file2 file3
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1360 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-31 18:55:14 +00:00 |
depristo
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1d84c9da96
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sortByRef now supports x:y location syntax
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1186 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-07 16:42:40 +00:00 |
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asivache
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3098ed091c
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checking in new folder for perl scripts AND a simple script that takes an input text file and reference dictionary (.fai) and performs stable sort of the input lines according to the contig order specified by the dictionary. Position of the contig filed to sort on in the input lines is specified as --k POS option. Input lines may specify contigs that are not in the dictionary, in this case the additional contigs will be added at the end of the sorted output, after all known contigs. The sorting order between these additional contigs is simply the order in which they first appear in the input
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@831 348d0f76-0448-11de-a6fe-93d51630548a
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2009-05-27 16:34:55 +00:00 |