hanna
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8f9dd03e87
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Get rid of unnecessary files for generating recalibration data.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1626 348d0f76-0448-11de-a6fe-93d51630548a
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2009-09-15 15:53:06 +00:00 |
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hanna
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e6827424b9
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Added support python and R scripts for generating covariate output graphs.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1625 348d0f76-0448-11de-a6fe-93d51630548a
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2009-09-15 14:17:36 +00:00 |
depristo
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f3f5e849cb
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SSG now in early access
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1581 348d0f76-0448-11de-a6fe-93d51630548a
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2009-09-10 16:45:19 +00:00 |
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hanna
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eb664ae287
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Added VariantFiltrationWalker to GATK early release.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1502 348d0f76-0448-11de-a6fe-93d51630548a
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2009-09-02 02:17:50 +00:00 |
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hanna
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e2ec703a32
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Added indel cleaner and quality scores recalibrator to the GATK package.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1311 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-24 16:20:38 +00:00 |
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hanna
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5d1345539d
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Packaging cleanup.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1242 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-14 21:00:02 +00:00 |
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hanna
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25365ccb07
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Adding more walkers to the base GATK package.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1241 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-14 20:40:52 +00:00 |
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hanna
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d0cef5ff9d
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Oops. Specified incorrect classname in packgae for depth of coverage walker.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1161 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-02 21:40:40 +00:00 |
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hanna
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62807139fc
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Cleanup pileup and depth of coverage in preparation for release. Add pileup, depth of coverage, and print reads to package for distribution.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1159 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-02 14:54:01 +00:00 |
aaron
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6570ce0b5b
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added the example files to the distro
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1152 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-01 23:16:42 +00:00 |
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hanna
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e93f751bd7
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First step in replacing the Hello, World! document. Revamped the HelloWalker and checked it into the source tree, created a special build file for it, and added it to the packaging tool.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1135 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-30 21:59:54 +00:00 |
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hanna
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29df74ae23
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Plumbed packaging support into build.xml and added package for GATK.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1012 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-15 19:41:16 +00:00 |