5b9a8555cd
Queue graph time is currently of O(n^m) where n = num jobs, m = num unique base files. This script therefore was running in order 1200^16, which I don't think would finish before the heat death of the universe. For now, push down the number of files to 1 and gather them outside of Queue, once I've fixed up scatter-gather in core, outputs can be uncommented.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5674 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-21 12:56:25 +00:00
23fac043d9
Fix the outputs so the proper files are gathered (not automatic due to multiplexer)
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5654 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-15 23:55:12 +00:00
8125b8b901
Old changes to the exome VQSR search.
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SGA updated to include new proportion-based insert size test.
Major fix for dichotomization test: MathUtils now optionally ignores NaN values for sums, averages, variances. In the future this feature can be pushed back into the AssociationContext object iself (e.g. no data? no entry), but it's kept like this for transparency for now.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5618 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-12 23:00:50 +00:00
fe7f45ee2e
First pass at recalibrating associations, with optional data whitening. Modification to the TableCodec so it can natively read bedgraph files (just needed to add an extra header marker: "track").
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5515 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-25 19:35:39 +00:00
cd90fdeca1
Right. The issue was not setting the scatter/gather classes appropriately.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5501 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-23 20:08:53 +00:00
3c1bf40a45
QScript for scatter-gathering regional association (not quite as easy as using the built-in extension, due to the multiplexer). Currently does not work due to something I'm missing re: scatter gather class, this commit is an interim one.
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5500 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-23 19:42:29 +00:00
chartl