gatk-3.8

Author	SHA1	Message	Date
hanna	85037ab13f	Fix for Kiran's sharding issue (Invalid GZIP header). General cleanup of Picard patch, including move of some of the Picard private classes we use to Picard public. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3087 348d0f76-0448-11de-a6fe-93d51630548a	2010-03-29 03:21:27 +00:00
hanna	3e54e131e0	Cleanup and formatting overhaul. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2652 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-21 19:22:56 +00:00
hanna	608fa4cc3a	Update packaging system to produce multiple jars if asked nicely. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2246 348d0f76-0448-11de-a6fe-93d51630548a	2009-12-03 17:11:12 +00:00
alecw	d563f4bd2c	Add IlluminaUtil to picard-private.jar git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2161 348d0f76-0448-11de-a6fe-93d51630548a	2009-11-25 19:25:21 +00:00
alecw	4082f4677e	Picard-private with classes for reading Picard dbSNP binary file git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2086 348d0f76-0448-11de-a6fe-93d51630548a	2009-11-19 17:24:28 +00:00
hanna	8eff1cc436	Extract and include only the Tim Fennell-approved parts of picard private. Hopefully this is a temporary solution and these classes will be migrated into picard-public. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2041 348d0f76-0448-11de-a6fe-93d51630548a	2009-11-13 19:42:33 +00:00