Commit Graph

3 Commits (2a5349d8861dbeefae9de5145cc0a3a150ea19a2)

Author SHA1 Message Date
hanna a95302fe98 Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still
needs to plumbed through and it may leak memory.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2095 348d0f76-0448-11de-a6fe-93d51630548a
2009-11-19 21:20:03 +00:00
hanna ce5034dc5d Finally reinstate the iterator-style interface. Get rid of some scaffolding code.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2052 348d0f76-0448-11de-a6fe-93d51630548a
2009-11-16 02:34:19 +00:00
hanna 15c14add4d Repackage the aligner for better partitioning. The C aligner, for example, is now
partitioned from the Java aligner, and both are partitioned from the more general-
purpose BWT reader.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2045 348d0f76-0448-11de-a6fe-93d51630548a
2009-11-13 22:55:27 +00:00