gatk-3.8

Commit Graph

Author	SHA1	Message	Date
hanna	a95302fe98	Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still needs to plumbed through and it may leak memory. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2095 348d0f76-0448-11de-a6fe-93d51630548a	2009-11-19 21:20:03 +00:00
hanna	ce5034dc5d	Finally reinstate the iterator-style interface. Get rid of some scaffolding code. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2052 348d0f76-0448-11de-a6fe-93d51630548a	2009-11-16 02:34:19 +00:00
hanna	15c14add4d	Repackage the aligner for better partitioning. The C aligner, for example, is now partitioned from the Java aligner, and both are partitioned from the more general- purpose BWT reader. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2045 348d0f76-0448-11de-a6fe-93d51630548a	2009-11-13 22:55:27 +00:00

Author

SHA1

Message

Date

hanna

a95302fe98

Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still

needs to plumbed through and it may leak memory.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2095 348d0f76-0448-11de-a6fe-93d51630548a

2009-11-19 21:20:03 +00:00

hanna

ce5034dc5d

Finally reinstate the iterator-style interface. Get rid of some scaffolding code.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2052 348d0f76-0448-11de-a6fe-93d51630548a

2009-11-16 02:34:19 +00:00

hanna

15c14add4d

Repackage the aligner for better partitioning. The C aligner, for example, is now

partitioned from the Java aligner, and both are partitioned from the more general-
purpose BWT reader.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2045 348d0f76-0448-11de-a6fe-93d51630548a

2009-11-13 22:55:27 +00:00

3 Commits (2a5349d8861dbeefae9de5145cc0a3a150ea19a2)