gatk-3.8

Author	SHA1	Message	Date
depristo	b934cc7554	Updates to fix some bugs in merger. Now able to merge into project wide indel VCF files. Integration teests coming tomorrow git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3727 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-07 03:16:33 +00:00
aaron	86031f4034	part two: todo's in combine variants, fixes for InferredGeneticContext, and some other tests and clean-up. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3721 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-05 21:07:53 +00:00
aaron	3347d1ca7c	part one of combining format and info header lines code into a single abstract class for Mark; plus some 'm' removals from access methods for Eric. Adding fixes for CombineVariants next. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3719 348d0f76-0448-11de-a6fe-93d51630548a	2010-07-05 05:57:58 +00:00