6 Commits (2953c9f06946e56c1db8d1976a044569fbe3d122)

Author	SHA1	Message	Date
kshakir	dce2c17404	Added "-bsubWait" where Queue waits for all the jobs to exit before exiting. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3661 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-28 19:52:17 +00:00
kshakir	c047232b18	Using picard for bam merging. ... Properties now propagate to scatter/gather functions. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3659 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-28 17:59:09 +00:00
kshakir	30cf78fdc0	Refactoring for a first version of scatter gather api with basic shell script implementations. ... Modified build script so that queue is cleaned during "ant clean". git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3611 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-22 18:39:20 +00:00
kshakir	32fc221ffe	Replaced pattern matched pipeline spec with annotated objects. ... Old version is no longer available. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3558 348d0f76-0448-11de-a6fe-93d51630548a	2010-06-15 04:43:46 +00:00
kshakir	ed4d8ddd05	Refactoring and sugar to give lower level access to the job graph. ... Will add more sugar / glue depending on how much of a graph the python generator outputs. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3435 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-25 22:52:29 +00:00
kshakir	e9ee55d7dd	A cleaned up functioning early, early access version of Queue for others to play with and provide feedback about next steps. ... Current version only has syntatic sugar for accessing the graph via rules ex. "bam" -> "bam.bai", "samtools index ${bam}" and DOES NOT have sugar for constructing your own graph. Usage info on the internal wiki at https://iwww.broadinstitute.org/gsa/wiki/index.php/Queue git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3420 348d0f76-0448-11de-a6fe-93d51630548a	2010-05-23 20:21:09 +00:00