2 Commits (27b1aa5dd3b8ecfc84aa96b810defc4c0aa2d7e9)

Author	SHA1	Message	Date
Ryan Poplin	d6871967ae	Adding more unit tests and contracts to PairHMM util class. Updating HaplotypeCaller to use the new PairHMM util class. Now that the HMM result isn't dependent on the length of the haplotype there is no reason to ensure all haplotypes have the save length which simplifies the code considerably.	2012-03-05 08:28:42 -05:00
Mark DePristo	aff508e091	ReadGroupProperties walker and associated infrastructure ... -- ReadGroupProperties: Emits a GATKReport containing read group, sample, library, platform, center, median insert size and median read length for each read group in every BAM file. -- Median tool that collects up to a given maximum number of elements and returns the median of the elements. -- Unit and integration tests for everything. -- Making name of TestProvider protected so subclasses and override name more easily	2012-03-01 15:01:11 -05:00