depristo
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f5b00c20d0
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Updated python files
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1182 348d0f76-0448-11de-a6fe-93d51630548a
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2009-07-07 14:15:39 +00:00 |
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depristo
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caf5aef0f8
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Much improved python analysis routines, as well as easier / more correct merging utility. Better R scripts, which now close recalibration data by the confidence of the quality score itself
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1081 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-24 01:12:35 +00:00 |
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depristo
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c9e6cb72e1
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Major improvements to python analysis code -- now computes a host of statistics about quality scores from the recal_data.csv file emitted by countcovariates. Includes average Q scores, medians, modes, stdev, coefficients of variation, RSME, and % bases > q10, q20, q30. Can finally quantify and compare the improvement of quality score recalibration.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1064 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-20 19:50:37 +00:00 |
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depristo
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9e26550b0d
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Apprach v2. Added python analysis script, so java no longer must be used to analyses quality score data. About to refactor out lots of unneeded code
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1063 348d0f76-0448-11de-a6fe-93d51630548a
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2009-06-20 16:00:23 +00:00 |