gatk-3.8

Commit Graph

Author	SHA1	Message	Date
ebanks	fddca032bb	Initial commit of v2.0 of the cleaner. DO NOT USE. (this means you, Chris) Cleaned up SW code and started moving over everything to use byte[] instead of String or char[]. Added a wrapper class for SAMFileWriter that allows for adding reads out of order. Not even close to done, but I need to commit now to sync up with Andrey. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2712 348d0f76-0448-11de-a6fe-93d51630548a	2010-01-27 21:36:42 +00:00
ebanks	59f0c00d77	-set indel cleaning walkers to be in core package -move Andrey's alignment utility classes to core git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1307 348d0f76-0448-11de-a6fe-93d51630548a	2009-07-24 05:23:29 +00:00

Author

SHA1

Message

Date

ebanks

fddca032bb

Initial commit of v2.0 of the cleaner. DO NOT USE. (this means you, Chris)

Cleaned up SW code and started moving over everything to use byte[] instead of String or char[].

Added a wrapper class for SAMFileWriter that allows for adding reads out of order.

Not even close to done, but I need to commit now to sync up with Andrey.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2712 348d0f76-0448-11de-a6fe-93d51630548a

2010-01-27 21:36:42 +00:00

ebanks

59f0c00d77

-set indel cleaning walkers to be in core package

-move Andrey's alignment utility classes to core


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1307 348d0f76-0448-11de-a6fe-93d51630548a

2009-07-24 05:23:29 +00:00

2 Commits (2520889cb35d09acf8313868c542bdfd98b9ae80)