5 Commits (230c1ad161c25c177b1fa9a4e08c4f0324278aac)

Author	SHA1	Message	Date
asivache	f47a214f96	massive changes everywhere; lots of bugs fixed; methods moved around; computation and printout of overall stats added; now decides whether to accept or reject 'improvement'; writes alignments into two output sam files (unmodified reads/failed piles into one, realigned piles into the other); special treat for paranoids: writes third sam file with all the analyzed reads, unmodified ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@197 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-26 02:26:17 +00:00
asivache	4c29dca70d	git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@186 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-25 09:23:42 +00:00
asivache	40f45c2333	git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@184 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-25 05:48:10 +00:00
asivache	3d1e0bf079	git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@166 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-24 14:06:24 +00:00
hanna	63cd1fe201	Push core / playground lower into the tree. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@160 348d0f76-0448-11de-a6fe-93d51630548a	2009-03-23 23:19:54 +00:00