gatk-3.8

Commit Graph

Author	SHA1	Message	Date
Phillip Dexheimer	1482a53aba	Added -writeFullFormat engine-level argument * This argument forces GATK to always write every record in the VCF format field, even if some records at the end are missing and could be removed * Revved htsjdk and picard * PT 70993484	2014-09-17 08:25:27 -04:00
Laura Gauthier	4373922ee6	Update GATK to work with latest htsjdk ValidationStringency was moved from htsjdk.samtools.SAMFileReader to htsjdk.samtools samtools find BAM index file method was also moved (and made public!)	2014-07-30 12:05:14 -04:00
Khalid Shakir	cc3f1f2b96	Revved picard libraries. Third of four commits for picard/htsjdk package rename.	2014-05-08 19:13:27 +08:00

Author

SHA1

Message

Date

Phillip Dexheimer

1482a53aba

Added -writeFullFormat engine-level argument

* This argument forces GATK to always write every record in the VCF format field, even if some records at the end are missing and could be removed
  * Revved htsjdk and picard
  * PT 70993484

2014-09-17 08:25:27 -04:00

Laura Gauthier

4373922ee6

Update GATK to work with latest htsjdk

ValidationStringency was moved from htsjdk.samtools.SAMFileReader to htsjdk.samtools
samtools find BAM index file method was also moved (and made public!)

2014-07-30 12:05:14 -04:00

Khalid Shakir

cc3f1f2b96

Revved picard libraries.

Third of four commits for picard/htsjdk package rename.

2014-05-08 19:13:27 +08:00

3 Commits (1cbf37c5399e122fdb791ffbdb2186418e84ffa0)