gatk-3.8

Author	SHA1	Message	Date
mozdal	0170d4f3d5	Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.	2014-01-21 09:30:15 -08:00
Karthik Gururaj	7180c392af	1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the SSE compilation warning. 2. Added code to dynamically select between AVX, SSE4.2 and normal C++ (in that order) 3. Created multiple files to compile with different compilation flags: avx_function_prototypes.cc is compiled with -xAVX while sse_function_instantiations.cc is compiled with -xSSE4.2 flag. 4. Added jniClose() and support in Java (HaplotypeCaller, PairHMMLikelihoodCalculationEngine) to call this function at the end of the program. 5. Removed debug code, kept assertions and profiling in C++ 6. Disabled OpenMP for now.	2014-01-20 08:03:42 -08:00
Karthik Gururaj	e6c6f8e313	Renamed directory	2014-01-16 20:28:50 -08:00

Author

SHA1

Message

Date

mozdal

Got rid of the MMX instructions in the SSE version of the code. Handling the mask operations in a class, which is defined for each version of SSE and AVX implementations separately.

2014-01-21 09:30:15 -08:00

Karthik Gururaj

7180c392af

1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the

SSE compilation warning.
2. Added code to dynamically select between AVX, SSE4.2 and normal C++ (in
that order)
3. Created multiple files to compile with different compilation flags:
avx_function_prototypes.cc is compiled with -xAVX while
sse_function_instantiations.cc is compiled with -xSSE4.2 flag.
4. Added jniClose() and support in Java (HaplotypeCaller,
PairHMMLikelihoodCalculationEngine) to call this function at the end of
the program.
5. Removed debug code, kept assertions and profiling in C++
6. Disabled OpenMP for now.

2014-01-20 08:03:42 -08:00

Karthik Gururaj

e6c6f8e313

Renamed directory

2014-01-16 20:28:50 -08:00

3 Commits (1b1c0c8e7618b7b8ae4c37745aea8f3e1601fdaf)