gatk-3.8

Author	SHA1	Message	Date
depristo	8f1a32acae	All exceptions thrown by the GATK have been reviewed and UserErrors replaced where appropriate. Shazam. Another check-in will remove the GATKException and restore the StingException. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4252 348d0f76-0448-11de-a6fe-93d51630548a	2010-09-10 15:25:30 +00:00
hanna	6e60cddfed	A fix for the 'rod blows up when it hits a GenomeLoc outside the reference' issu e. Really a stopgap; error handling in the RODs needs to be addressed in a more comprehensive way. Right now, hasNext() isn't guaranteed to be correct. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@878 348d0f76-0448-11de-a6fe-93d51630548a	2009-06-02 18:14:46 +00:00

Author

SHA1

Message

Date

depristo

All exceptions thrown by the GATK have been reviewed and UserErrors replaced where appropriate. Shazam. Another check-in will remove the GATKException and restore the StingException.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4252 348d0f76-0448-11de-a6fe-93d51630548a

2010-09-10 15:25:30 +00:00

hanna

6e60cddfed

A fix for the 'rod blows up when it hits a GenomeLoc outside the reference' issu

e.  Really a stopgap; error handling in the RODs needs to be addressed in a more comprehensive way.  Right now, hasNext() isn't guaranteed to be correct.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@878 348d0f76-0448-11de-a6fe-93d51630548a

2009-06-02 18:14:46 +00:00

2 Commits (1876c9856adf9111b1b0055f746814f66353d13f)