gatk-3.8

Author	SHA1	Message	Date
hanna	d14cab0be7	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@693 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-13 21:32:05 +00:00
hanna	9f5f6f9bc7	N-way parallelism. Works for small test cases. Untested for large test cases. -Needs more comprehensive unit testing. -Needs some basic refactoring. -Needs rethink of interface boundaries. -Needs to play more nicely in the /tmp sandbox. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@583 348d0f76-0448-11de-a6fe-93d51630548a	2009-05-01 19:34:09 +00:00
hanna	7f173af2ea	Encapsulate output tracking a bit. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@570 348d0f76-0448-11de-a6fe-93d51630548a	2009-04-30 15:12:13 +00:00