0ee2375292
Working on reference ordered data; added build.xml for ant!
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@14 348d0f76-0448-11de-a6fe-93d51630548a
2009-03-01 18:27:32 +00:00
f64f3e2d90
Phase II support for generic reference order data set parsing.
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Can read GFF and dbSNP files correctly.
Traversal engine now supports keeping moving window of reference ordered data along with the locus iterator.
Tested by walking through a sam file keeping track of the dbSNP positions encountered -- they definitely look right...
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@13 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-28 20:47:48 +00:00
dee840efa5
Moved out of java/src
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@12 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-28 17:52:34 +00:00
69e9a467d0
Wrong directory
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@11 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-28 17:52:16 +00:00
bd1fadd9fe
Validating walker for lots of bam files
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@10 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-28 17:05:08 +00:00
e892c3fd98
Shouldn't be in the tree
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@9 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-28 15:31:17 +00:00
17aabb38f9
Basic reorganization of tree
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@8 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-28 15:28:56 +00:00
c9f0161e24
Initial support for reference ordered data sets
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@7 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-27 17:07:57 +00:00
bb55947e2e
Better organization of AnalysisTK modules
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@6 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-26 22:15:41 +00:00
5e3adc76fc
Initial Analysis toolkit
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-26 21:50:51 +00:00
59083a47d5
Initial Analysis toolkit
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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4 348d0f76-0448-11de-a6fe-93d51630548a
2009-02-26 21:50:29 +00:00
depristo