3 Commits (097ed4ecc46b09497a7b868db6ceca8c5fafc6e7)

Author	SHA1	Message	Date
Mark DePristo	1aa4b12ff0	Reduced the number of combinations being tested here, which was overkill	2011-09-01 10:42:43 -04:00
David Roazen	d647ea4fdc	Long-delayed change to CachingIndexedFastaSequenceFile. Made the cache ... non-static to avoid problems when multiple references are used within the same thread (eg., during integration tests). This should kill the intermittent IndelRealignerIntegrationTest failures.	2011-07-01 16:04:30 -04:00
David Roazen	3c9497788e	Reorganized the codebase beneath top-level public and private directories, ... removing the playground and oneoffprojects directories in the process. Updated build.xml accordingly.	2011-06-28 06:55:19 -04:00